Decapterus maruadsi is a commercially important species in China, but has been heavily exploited in some areas. There is a growing need to develop microsatellites promoting its genetic research for the adequate management of this fishery resources. The recently developed specific-locus amplified fragment sequencing (SLAF-seq) is an efficient and high-resolution method for genome-wide microsatellite markers discovery. In this study, 28 905 microsatellites (mono- to hexa-nucleotide repeats) were identified using SLAF-seq technology, of which di-nucleotide was the most frequent (13 590, 47.02%), followed by mono-nucleotide (8 138, 28.15%), tri-nucleotide (5 727, 19.81%), tetra-nucleotide (1 104, 3.82%), pentanucleotide (234, 0.81%), and hexa-nucleotide (112, 0.39%). One hundred and thirty-two microsatellite loci (di- and tri-nucleotide) were randomly selected for amplification and polymorphism, of which 49 were highly polymorphic and well-resolved. The average number of alleles per locus was 13.63, ranging from 4 to 25, and allele sizes varied between 110 bp and 309 bp. The observed heterozygosity ( Ho ) and expected heterozygosity ( He ) ranged from 0.233 to 1.000 and from 0.374 to 0.959, with mean values of 0.738 and 0.836, respectively. The polymorphism information content (PIC) ranged from 0.341 to 0.941 (mean=0.806). However, 12 loci deviated from Hardy-Weinberg equilibrium. Furthermore, transferability tests were also successful in validating the utility of the developed markers in five phylogenetically related species of family Carangidae. A total of 48 microsatellite markers were successfully cross-amplified in Decapterus macarellus, Decapterus macrosoma, Decapterus kurroides, Trachurus japonicus, and Selaroides leptolepis. The present microsatellites provided the first known set of microsatellite DNA markers for D. maruadsi, D. macarellus, D. kurroides, and D. macrosoma, and would be useful for further population genetic and molecular phylogeny studies as well as help with the fisheries management formulation and implementation of the understudied species.
Natural Resources Research - This study tested and compared the mineral potential mapping capabilities of the random forest (RF) and maximum entropy (MaxEnt) algorithms using gold deposit... 相似文献
Chinese summer extreme rainfall often brings huge economic losses, so the prediction of summer extreme rainfall is necessary. This study focuses on the predictability of the leading mode of Chinese summer extreme rainfall from empirical orthogonal function(EOF) analysis. The predictors used in this study are Arctic sea ice concentration(ASIC) and regional sea surface temperature(SST) in selected optimal time periods. The most important role that Arctic sea ice(ASI) plays in the appearance of EOF1 may be strengthening the high pressure over North China, thereby preventing water vapor from going north. The contribution of SST is mainly at low latitudes and characterized by a significant cyclone anomaly over South China. The forecast models using predictor ASIC(PA), SST(PS), and the two together(PAS) are established by using data from 1980 to 2004. An independent forecast is made for the last 11 years(2005-2015). The correlation coefficient(COR) skills between the observed and cross-validation reforecast principal components(PC) of the PA, PS, and PAS models are 0.47, 0.66, and 0.76, respectively. These values indicate that SST is a major cause of Chinese summer extreme rainfall during 1980-2004. The COR skill of the PA model during the independent forecast period of 2004-2015 is 0.7, which is significantly higher than those of the PS and PAS models. Thus, the main factor influencing Chinese summer extreme rainfall in recent years has changed from low latitudes to high latitudes. The impact of ASI on Chinese summer extreme rainfall is becoming increasingly significant. 相似文献
